Pacific Symposium on Biocomputing 2004 : Hawaii, USA, 6-10 January 2004 /
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| Other Authors: | |
| Format: | Book |
| Language: | English |
| Published: |
Singapore ; River Edge, NJ :
World Scientific,
©2003.
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| Subjects: | |
| Online Access: | http://search.ebscohost.com/login.aspx?direct=true&scope=site&db=nlebk&AN=174558 |
Table of Contents:
- Alternative splicing. Session introduction / H. Wang and C. Lee
- Design of a high-throughput assay for alternative splicing using polymerase colonies / J.D. Buhler [and others]
- The effects of alternative splicing on transmembrane proteins in the mouse genome / M.S. Cline [and others]
- Genome-wide detection of alternative splicing in expressed sequences using partial order multiple sequence alignment graphs / C. Grasso [and others]
- Detection of novel splice forms in human and mouse using cross-species approach / Z. Kan [and others]
- Extensive search for discriminative features of alternative splicing / H. Sakai and O. Maruyama
- Transcriptome and genome conservation of alternative splicing events in humans and mice / C.W. Sugnet [and others]
- A database designed to computationally aid an experimental approach to alternative splicing / C.L. Zheng [and others]
- Computational tools for complex trait gene mapping. Session Introduction / F. de la Vega, K.K. Kidd, and A. Collins
- Pedigree generation for analysis of genetic linkage and association / M.P. Bass, E.R. Martin, and E.R. Hauser
- A Markov chain approach to reconstruction of long haplotypes / L. Eronen, F. Geerts, and H. Toivonen
- Tradeoff between no-call reduction in genotyping error rate and loss of sample size for genetic case/control association studies / S.J. Kang [and others]
- A comparison of different strategies for computing confidence intervals of the linkage disequilibrium measure D' / S.K. Kim, K. Zhang, and F. Sun
- Multiplexing schemes for generic SNP genotyping assays / R. Sharan, A. Ben-Dor and Z. Yakhini
- Haplotype block definition and its application / X. Zhu [and others]
- Biomedical ontologies. Session introduction / O. Bodenreidel, J.A. Mitchell, and A.T. McCray
- Part-of relations in anatomy ontologies: a proposal for RDFS and OWL formalisations / J.S. Aitken, B.L. Webber, and J.B.L. Bard
- Building mouse phenotype ontologies / G.V. Gkoutos [and others]
- An evidence ontology for use in pathway/genome databases / P.D. Karp [and others]
- Terminological mapping for high throughput comparative biology of phenotypes / Y.A. Lussier and J. Li
- The compositional structure of gene ontology terms / P.V. Ogren [and others]
- Defaults, context, and knowledge: alternatives for OWL-indexed knowledge bases / A. Rector
- Biological nomenclatures: a source of lexical knowledge and ambiguity / O. Tuason [and others]
- Investigating implicit knowledge in ontologies with application to the anatomical domain / S. Zhang and O. Bodenreider
- Joint learning from multiple types of genomic data. Session introduction / A. Hartemink and E. Segal
- ProGreSS: simultaneous searching of protein databases by sequence and structure / A. Bhattacharya [and others]
- Predicting the operon structure of bacillus subtilis using operon length, intergene distance, and gene expression information / M.J.L. De Hoon [and others].
- Combining text mining and sequence analysis to discover protein functional regions / E. Eskin and E. Agichtein
- Kernel-based data fusion and its application to protein function prediction in yeast / G.R.G. Lanckriet [and others]
- Discovery of binding motif pairs from protein complex structural data and protein interaction sequence data / H. Li [and others]
- Phylogenetic motif detection by expectation-maximization on evolutionary mixtures / A.M. Moses, D.Y. Chiang, and M.B. Eisen
- Using protein-protein interactions for refining gene networks estimated from microarray data by Bayesian networks / N. Nariai [and others]
- Motif discovery in heterogeneous sequence data / A. Prakash [and others]
- Negative information for motif discovery / K.T. Takusagawa and D.K. Gifford
- Informatics approaches in structural genomics. Session introduction / S.D. Mooney, P.E. Bourne, and P.C. Babbitt
- The status of structural genomics defined through the analysis of current targets and structures / P.E. Bourne [and others]
- Protein structure and fold prediction using tree-augmented naïve Bayesian classifier / A. Chinnasamy, W.-K. Sung, and A. Mittal
- Clustering protein sequence and structure space with infinite Gaussian mixture models / A. Dubey [and others]
- Accurate classification of protein structural families using coherent subgraph analysis / J. Huan [and others]
- Identifying good predictions of RNA secondary structure / M.E. Nebelss
- Exploring bias in the protein data bank using contrast classifiers / K. Peng, Z. Obradovic, and S. Vucetic
- Geometric analysis of cross-linkability for protein fold discrimination / S. Potluri [and others]
- Protein fold recognition through application of residual dipolar coupling data / Y. Qu [and others]
- Computational and symbolic systems biology. Session introduction / T. Ideker; E. Neumann, and V. Schachter
- A mixed integer linear programming (MILP) framework for inferring time delay in gene regulatory networks / M.S. Dasika, A. Gupta, and C.D. Maranas
- Robust identification of large genetic networks / D. Di Bernardo, T.S. Gardner, and J.J. Collins
- Reconstructing chain functions in genetic networks / I. Gat-Viks [and others]
- Inferring gene regulatory networks from raw data
- a molecular epistemics approach / D.A. Kightley, N. Chandra, and K. Elliston
- A Biospi model of lymphocyte-endothelial interactions in inflamed brain venules / P. Lecca [and others]
- Modeling cellular processes with variational Bayesian cooperative vector quantizer / X. Lu, M. Hauskrecht, and R.S. Day
- Symbolic inference of xenobiotic metabolism / D.C. McShan, M. Updadhayaya, and I. Shah
- Finding optimal models for small gene networks / S. Ott, S. Imoto, and S. Miyano
- Pathway logic modeling of protein functional domains in signal transduction / C. Talcott [and others]
- Modeling gene expression from microarray expression data with state-space equations / F.X. Wu, W.J. Zhang, and A.J. Kusalik.